Phyloseminar 2015: Tutorial for density dependent diversification

diversitydependent.pdf diversitydependent.Rmd diversity dependent diversification tutorial Rosana Zenil-Ferguson November 8, 2015 library(“TreeSim”) ## Loading required package: ape ## Loading required package: geiger ## Loading required package: laser library(“TreePar”) ## Loading required package: Matrix ## Loading required package: subplex ## Loading required package: deSolve ## ## Attaching package: ‘deSolve’ ## ## The following object is masked…

Phyloseminar 2015: BAMM tutorial

BAMM Tutorial Phyloseminar 2015.pdf BAMM Tutorial Phyloseminar 2015 Orlando Schwery 2015-10-25 This tutorial largely follows the tutorials by Dan Rabosky on his website. Installation BAMM consists of two components, the program that runs the actual analysis is in C++ (to be faster), while the analysis of the outputs happens in R. BAMM Easiest might be…

Phyloseminar BiSSE

Exercise by Rosana Zenil-Ferguson for understanding diversitree. Week6-BisseTutorial.pdf Week6-BisseTutorial.Rmd bird_pruned_MB.newick birdmigration.txt

Phyloseminar 2015: Exercise 1, diversification

This week we’re learning about simulating diversification. Relevant tutorial to do in class (in three formats: PDF, MS Word, and Markdown (zipped) Week2-08312015Tutorial.pdf Week2-08312015Tutorial.docx Week2-08312015Tutorial.Rmd.zip